Detailed information of SNP:
|
SNP ID:
sf0400952784(Gbrowse)
Chromosome: chr04 Position: 952784 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.82% | 34.18% |
| All Indica | 797 | 55.33% | 44.67% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400952784 | T->G | INTERGENIC | None |