Detailed information of SNP:
|
SNP ID:
sf0400961998(Gbrowse)
Chromosome: chr04 Position: 961998 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 60.29% | 39.71% |
| All Indica | 777 | 69.24% | 30.76% |
| All Japonica | 497 | 45.07% | 54.93% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 368 | 78.26% | 21.74% |
| Indica II | 205 | 58.54% | 41.46% |
| Indica Intermediate | 204 | 63.73% | 36.27% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400961998 | A->C | INTERGENIC | None |