Detailed information of SNP:
|
SNP ID:
sf0400991814(Gbrowse)
Chromosome: chr04 Position: 991814 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.38% | 25.62% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 496 | 35.69% | 64.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 16.77% | 83.23% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400991814 | T->C | INTERGENIC | None |