Detailed information of SNP:
|
SNP ID:
sf0400994491(Gbrowse)
Chromosome: chr04 Position: 994491 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.95% | 9.05% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 495 | 80.61% | 19.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 333 | 79.28% | 20.72% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0400994491 | G->T | LOC_Os04g02640(LOC_Os04g02640.1) | UTR_3_PRIME |