Detailed information of SNP:
|
SNP ID:
sf0401001278(Gbrowse)
Chromosome: chr04 Position: 1001278 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.60% | 13.40% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401001278 | G->A | LOC_Os04g02660(LOC_Os04g02660.1) | Non-Synonymous SNP |