Detailed information of SNP:
|
SNP ID:
sf0401015556(Gbrowse)
Chromosome: chr04 Position: 1015556 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 56.42% | 43.58% |
| All Indica | 725 | 32.55% | 67.45% |
| All Japonica | 493 | 88.03% | 11.97% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 368 | 15.49% | 84.51% |
| Indica II | 169 | 41.42% | 58.58% |
| Indica Intermediate | 188 | 57.98% | 42.02% |
| Temperate Japonica | 331 | 87.61% | 12.39% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401015556 | G->A | INTERGENIC | None |