Detailed information of SNP:
|
SNP ID:
sf0401018866(Gbrowse)
Chromosome: chr04 Position: 1018866 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 95.79% | 4.21% |
| All Indica | 764 | 93.06% | 6.94% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 360 | 94.44% | 5.56% |
| Indica II | 200 | 93.00% | 7.00% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401018866 | C->A | INTERGENIC | None |