Detailed information of SNP:
|
SNP ID:
sf0401019741(Gbrowse)
Chromosome: chr04 Position: 1019741 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.57% | 41.43% |
| All Indica | 795 | 36.23% | 63.77% |
| All Japonica | 495 | 90.91% | 9.09% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 19.52% | 80.48% |
| Indica II | 211 | 49.76% | 50.24% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 334 | 90.12% | 9.88% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401019741 | C->T | LOC_Os04g02690(LOC_Os04g02690.1) | UTR_3_PRIME |