Detailed information of SNP:
|
SNP ID:
sf0401038547(Gbrowse)
Chromosome: chr04 Position: 1038547 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.86% | 6.14% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401038547 | C->A | LOC_Os04g02720(LOC_Os04g02720.1) | INTRON |