Detailed information of SNP:
|
SNP ID:
sf0401051795(Gbrowse)
Chromosome: chr04 Position: 1051795 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.45% | 45.55% |
| All Indica | 797 | 80.80% | 19.20% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401051795 | T->C | LOC_Os04g02754(LOC_Os04g02754.1) | INTRON |