Detailed information of SNP:
|
SNP ID:
sf0401108965(Gbrowse)
Chromosome: chr04 Position: 1108965 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.18% | 10.82% |
| All Indica | 795 | 88.30% | 11.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401108965 | G->T | INTERGENIC | None |