Detailed information of SNP:
|
SNP ID:
sf0401110016(Gbrowse)
Chromosome: chr04 Position: 1110016 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.32% | 49.68% |
| All Indica | 798 | 61.28% | 38.72% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401110016 | C->A | LOC_Os04g02860(LOC_Os04g02860.1) | INTRON |