Detailed information of SNP:
|
SNP ID:
sf0401110993(Gbrowse)
Chromosome: chr04 Position: 1110993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.39% | 20.61% |
| All Indica | 797 | 76.54% | 23.46% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401110993 | C->T | LOC_Os04g02860(LOC_Os04g02860.1) | INTRON |