Detailed information of SNP:
|
SNP ID:
sf0401113392(Gbrowse)
Chromosome: chr04 Position: 1113392 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.27% | 35.73% |
| All Indica | 799 | 49.06% | 50.94% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401113392 | T->G | LOC_Os04g02860(LOC_Os04g02860.1) | Synonymous |