Detailed information of SNP:
|
SNP ID:
sf0401113558(Gbrowse)
Chromosome: chr04 Position: 1113558 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.13% | 35.87% |
| All Indica | 799 | 48.81% | 51.19% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401113558 | C->T | LOC_Os04g02860(LOC_Os04g02860.1) | Non-Synonymous SNP |