Detailed information of SNP:
|
SNP ID:
sf0401113582(Gbrowse)
Chromosome: chr04 Position: 1113582 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.17% | 35.83% |
| All Indica | 798 | 48.75% | 51.25% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 18.45% | 81.55% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401113582 | A->G | LOC_Os04g02860(LOC_Os04g02860.1) | Non-Synonymous SNP |