Detailed information of SNP:
|
SNP ID:
sf0401131527(Gbrowse)
Chromosome: chr04 Position: 1131527 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 77.89% | 22.11% |
| All Indica | 797 | 77.92% | 22.08% |
| All Japonica | 492 | 86.38% | 13.62% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 330 | 81.82% | 18.18% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401131527 | C->A | LOC_Os04g02900(LOC_Os04g02900.1) | UTR_5_PRIME |