Detailed information of SNP:
|
SNP ID:
sf0401145803(Gbrowse)
Chromosome: chr04 Position: 1145803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.22% | 10.78% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401145803 | C->T | LOC_Os04g02910(LOC_Os04g02910.1) | INTRON |
| sf0401145803 | C->T | LOC_Os04g02910(LOC_Os04g02910.4) | INTRON |
| sf0401145803 | C->T | LOC_Os04g02910(LOC_Os04g02910.3) | INTRON |