Detailed information of SNP:
|
SNP ID:
sf0401148413(Gbrowse)
Chromosome: chr04 Position: 1148413 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 77.52% | 22.48% |
| All Indica | 741 | 94.60% | 5.40% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 349 | 99.43% | 0.57% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 189 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 37.01% | 62.99% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401148413 | T->A | INTERGENIC | None |