Detailed information of SNP:
|
SNP ID:
sf0401148450(Gbrowse)
Chromosome: chr04 Position: 1148450 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.56% | 32.44% |
| All Indica | 799 | 54.44% | 45.56% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401148450 | C->T | INTERGENIC | None |