Detailed information of SNP:
|
SNP ID:
sf0401149109(Gbrowse)
Chromosome: chr04 Position: 1149109 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.17% | 43.83% |
| All Indica | 799 | 51.69% | 48.31% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401149109 | C->T | INTERGENIC | None |