Detailed information of SNP:
|
SNP ID:
sf0401150277(Gbrowse)
Chromosome: chr04 Position: 1150277 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 69.21% | 30.79% |
| All Indica | 791 | 92.67% | 7.33% |
| All Japonica | 464 | 26.08% | 73.92% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 328 | 11.59% | 88.41% |
| Tropical Japonica | 80 | 71.25% | 28.75% |
| Japonica Intermediate | 56 | 46.43% | 53.57% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401150277 | G->T | INTERGENIC | None |