Detailed information of SNP:
|
SNP ID:
sf0401150338(Gbrowse)
Chromosome: chr04 Position: 1150338 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.30% | 29.70% |
| All Indica | 794 | 92.95% | 7.05% |
| All Japonica | 497 | 30.99% | 69.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401150338 | A->G | INTERGENIC | None |