Detailed information of SNP:
|
SNP ID:
sf0401151419(Gbrowse)
Chromosome: chr04 Position: 1151419 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 86.77% | 13.23% |
| All Indica | 787 | 86.02% | 13.98% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 82.57% | 17.43% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401151419 | C->A | INTERGENIC | None |