Detailed information of SNP:
|
SNP ID:
sf0401155990(Gbrowse)
Chromosome: chr04 Position: 1155990 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 62.89% | 37.11% |
| All Indica | 787 | 57.05% | 42.95% |
| All Japonica | 495 | 77.17% | 22.83% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 371 | 83.56% | 16.44% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 203 | 51.23% | 48.77% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401155990 | T->C | INTERGENIC | None |