Detailed information of SNP:
|
SNP ID:
sf0401156045(Gbrowse)
Chromosome: chr04 Position: 1156045 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.21% | 10.79% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401156045 | C->T | INTERGENIC | None |