Detailed information of SNP:
|
SNP ID:
sf0401156742(Gbrowse)
Chromosome: chr04 Position: 1156742 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 73.53% | 26.47% |
| All Indica | 795 | 68.18% | 31.82% |
| All Japonica | 495 | 80.00% | 20.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 210 | 25.71% | 74.29% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401156742 | C->T | LOC_Os04g02920(LOC_Os04g02920.1) | INTRON |