Detailed information of SNP:
|
SNP ID:
sf0401158505(Gbrowse)
Chromosome: chr04 Position: 1158505 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.30% | 28.70% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 32.19% | 67.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401158505 | C->G | LOC_Os04g02920(LOC_Os04g02920.1) | INTRON |