Detailed information of SNP:
|
SNP ID:
sf0401194835(Gbrowse)
Chromosome: chr04 Position: 1194835 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 94.45% | 5.55% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 469 | 88.06% | 11.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 76 | 65.79% | 34.21% |
| Japonica Intermediate | 59 | 67.80% | 32.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401194835 | C->T | INTERGENIC | None |