Detailed information of SNP:
|
SNP ID:
sf0401195921(Gbrowse)
Chromosome: chr04 Position: 1195921 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.04% | 7.96% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401195921 | T->C | INTERGENIC | None |