Detailed information of SNP:
|
SNP ID:
sf0401202677(Gbrowse)
Chromosome: chr04 Position: 1202677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.40% | 32.60% |
| All Indica | 797 | 58.34% | 41.66% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 211 | 15.64% | 84.36% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401202677 | C->T | INTERGENIC | None |