Detailed information of SNP:
|
SNP ID:
sf0401208036(Gbrowse)
Chromosome: chr04 Position: 1208036 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 93.09% | 6.91% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 81.85% | 18.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401208036 | T->C | LOC_Os04g02980(LOC_Os04g02980.1) | INTRON |