Detailed information of SNP:
|
SNP ID:
sf0401214955(Gbrowse)
Chromosome: chr04 Position: 1214955 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.25% | 26.75% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 37.42% | 62.58% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401214955 | A->G | INTERGENIC | None |