Detailed information of SNP:
|
SNP ID:
sf0401221378(Gbrowse)
Chromosome: chr04 Position: 1221378 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 87.78% | 12.22% |
| All Indica | 791 | 94.82% | 5.18% |
| All Japonica | 477 | 73.79% | 26.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 207 | 84.06% | 15.94% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 316 | 64.24% | 35.76% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401221378 | C->T | INTERGENIC | None |