Detailed information of SNP:
|
SNP ID:
sf0401223522(Gbrowse)
Chromosome: chr04 Position: 1223522 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 82.97% | 17.03% |
| All Indica | 783 | 91.70% | 8.30% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401223522 | T->C | INTERGENIC | None |