Detailed information of SNP:
|
SNP ID:
sf0401226642(Gbrowse)
Chromosome: chr04 Position: 1226642 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.18% | 49.82% |
| All Indica | 799 | 52.69% | 47.31% |
| All Japonica | 491 | 53.97% | 46.03% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 333 | 47.45% | 52.55% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401226642 | C->T | LOC_Os04g03020(LOC_Os04g03020.1) | INTRON |