Detailed information of SNP:
|
SNP ID:
sf0401243409(Gbrowse)
Chromosome: chr04 Position: 1243409 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 88.34% | 11.66% |
| All Indica | 765 | 80.65% | 19.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 203 | 57.64% | 42.36% |
| Indica Intermediate | 201 | 76.12% | 23.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401243409 | G->T | INTERGENIC | None |