Detailed information of SNP:
|
SNP ID:
sf0401245006(Gbrowse)
Chromosome: chr04 Position: 1245006 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.87% | 29.13% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 38.03% | 61.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 47.46% | 52.54% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401245006 | T->G | LOC_Os04g03050(LOC_Os04g03050.1) | INTRON |