Detailed information of SNP:
|
SNP ID:
sf0401248711(Gbrowse)
Chromosome: chr04 Position: 1248711 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 62.14% | 37.86% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 487 | 13.76% | 86.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 325 | 14.15% | 85.85% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401248711 | G->A | LOC_Os04g03050(LOC_Os04g03050.1) | INTRON |