Detailed information of SNP:
|
SNP ID:
sf0401252034(Gbrowse)
Chromosome: chr04 Position: 1252034 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 80.38% | 19.62% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 52.84% | 47.16% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401252034 | A->G | LOC_Os04g03050(LOC_Os04g03050.1) | Synonymous |