Detailed information of SNP:
|
SNP ID:
sf0401253185(Gbrowse)
Chromosome: chr04 Position: 1253185 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.25% | 39.75% |
| All Indica | 799 | 49.44% | 50.56% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401253185 | C->T | LOC_Os04g03050(LOC_Os04g03050.1) | INTRON |