Detailed information of SNP:
|
SNP ID:
sf0401287434(Gbrowse)
Chromosome: chr04 Position: 1287434 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 96.26% | 3.74% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401287434 | A->G | LOC_Os04g03110(LOC_Os04g03110.1) | Synonymous |