Detailed information of SNP:
|
SNP ID:
sf0401289466(Gbrowse)
Chromosome: chr04 Position: 1289466 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 94.76% | 5.24% |
| All Indica | 796 | 98.24% | 1.76% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401289466 | C->T | LOC_Os04g03110(LOC_Os04g03110.1) | Non-Synonymous SNP |