Detailed information of SNP:
|
SNP ID:
sf0401289510(Gbrowse)
Chromosome: chr04 Position: 1289510 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 95.39% | 4.61% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401289510 | A->T | LOC_Os04g03110(LOC_Os04g03110.1) | INTRON |