Detailed information of SNP:
|
SNP ID:
sf0401316703(Gbrowse)
Chromosome: chr04 Position: 1316703 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 72.08% | 27.92% |
| All Indica | 796 | 84.80% | 15.20% |
| All Japonica | 493 | 48.88% | 51.12% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 332 | 31.63% | 68.37% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401316703 | G->A | LOC_Os04g03164(LOC_Os04g03164.1) | UTR_3_PRIME |