Detailed information of SNP:
|
SNP ID:
sf0401327648(Gbrowse)
Chromosome: chr04 Position: 1327648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 91.36% | 8.64% |
| All Indica | 784 | 92.86% | 7.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 368 | 91.58% | 8.42% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401327648 | C->T | LOC_Os04g03180(LOC_Os04g03180.1) | INTRON |