Detailed information of SNP:
|
SNP ID:
sf0401329150(Gbrowse)
Chromosome: chr04 Position: 1329150 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1228 | 80.05% | 19.95% |
| All Indica | 632 | 71.68% | 28.32% |
| All Japonica | 492 | 99.59% | 0.41% |
| Aus | 56 | 5.36% | 94.64% |
| Indica I | 312 | 85.26% | 14.74% |
| Indica II | 173 | 53.76% | 46.24% |
| Indica Intermediate | 147 | 63.95% | 36.05% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 34 | 85.29% | 14.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401329150 | G->A | LOC_Os04g03180(LOC_Os04g03180.1) | INTRON |