Detailed information of SNP:
|
SNP ID:
sf0401329857(Gbrowse)
Chromosome: chr04 Position: 1329857 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.31% | 9.69% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 493 | 82.15% | 17.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401329857 | C->T | LOC_Os04g03180(LOC_Os04g03180.1) | INTRON |