Detailed information of SNP:
|
SNP ID:
sf0401330194(Gbrowse)
Chromosome: chr04 Position: 1330194 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.89% | 32.11% |
| All Indica | 796 | 45.23% | 54.77% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 26.54% | 73.46% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401330194 | G->A | LOC_Os04g03180(LOC_Os04g03180.1) | INTRON |