Detailed information of SNP:
|
SNP ID:
sf0401342377(Gbrowse)
Chromosome: chr04 Position: 1342377 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 96.22% | 3.78% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 457 | 89.28% | 10.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 84.23% | 15.77% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401342377 | A->T | LOC_Os04g03190(LOC_Os04g03190.1) | Non-Synonymous SNP |